BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB023C01LP1|AL428017
(865 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1734 946 0.0
>3x_Contig1734
Length = 17938
Score = 946 bits (470), Expect = 0.0
Identities = 549/570 (96%), Gaps = 10/570 (1%)
Strand = Plus / Minus
Query: 1 gatcttgataatctgtctcatttcatcttcgaacccaatttccaagatacgatccgcttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12730 gatcttgataatctgtctcatttcatcttcgaacccaatttccaagatacgatccgcttc 12671
Query: 61 atcgatgacaagagccttcaagttcttataagatgaagcccttagtagattattgtaaat 120
|||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||
Sbjct: 12670 atcgatgacaagagccttcaagttctta-aagatgaagcccttagtg---ttttgtaaat 12615
Query: 121 gatccaagcaaacgacctggagtacgcaatcaagatgttaacacctttcattaacttatc 180
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 12614 gatccaa-caaacgacctggagta-gcaatcaagatgttaacacctttcattaacttatc 12557
Query: 181 cgcttcttgkctacggtttgcacctccaatgacaataccaaaagtttgactgtggaattc 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12556 cgcttcttgtctacggtttgcacctccaatgacaataccaaaagtttgactgtggaattc 12497
Query: 241 catcaattcacgagcaacaccaaagatttgcaacgcyaattctctccgtaggagttatca 300
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||
Sbjct: 12496 catcaattcacgagcaacaccaaagatttgcaacgctaattctctc-gtaggagtaatca 12438
Query: 301 caatgagcaccggtaccatttcttggcttgaatttcaaagaatgtracatctcgatagct 360
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 12437 caatga-caccggtaccatttcttggcttgaatttcaaagaatgtaacatctcgatagct 12379
Query: 361 ggaatcaaaaatgccaaagtcttacctgaaccggtcttggcmgcacccaacacatccttc 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 12378 ggaatcaaaaatgccaaagtcttacctgaaccggtcttggcagcacccaacacatccttc 12319
Query: 421 cctgccaaaagaggaggaatggtacgagtctgaacagcagtyatctgcgtsaagcccatc 480
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 12318 cctgccaaaagaggaggaatggtacgagtctgaacagcagtcatctgcgtgaagcccatc 12259
Query: 481 ttaccgcatagccttcatggkaccatcactaagcttcaaatcactaaaagaaccctctac 540
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 12258 ttaccg-atagccttcatggtaccatcactaagcttcaaatcactaaaagaaccctctac 12200
Query: 541 ttcaccagtcgtacgcagtgtccttgacta 570
||||||||| ||| ||||||||||||||||
Sbjct: 12199 ttcaccagtagta-gcagtgtccttgacta 12171
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.40 0.714 1.32
Gapped
Lambda K H
1.40 0.714 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6987
Number of Sequences: 1807
Number of extensions: 6987
Number of successful extensions: 643
Number of sequences better than 1.0e-20: 1
length of query: 865
length of database: 10,358,551
effective HSP length: 16
effective length of query: 849
effective length of database: 10,329,639
effective search space: 8769863511
effective search space used: 8769863511
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.2 bits)
S1: 12 (24.6 bits)
S2: 50 (101.1 bits)